Image Processing

The Microscopy and Imaging Facility has a number of computers available to assist you with your image processing needs.  Computers in the facility include the following software:

Metamorph Imaging Software v6.1:  Typical applications include: particle counting and measurement from TEM, fluorescence overlays, projections and movies.  Tutorials are available.

Leica Confocal Software Simulator: Offline version of the Leica SP2AOBS software.  Image processing and 3D reconstructions, move exporsts for Leica acquired images.  Tutorials are available.

Adobe CS Suite:  Includes Photoshop, Illustrator, ImageReady and InDesign.  Photoshop is our common-use software for working with images.  Tutorials are available for image optimization in preparation for image processing or publication.

FCS Express 5 Plus: Flow cytometry and microscopy image analysis.

Modfit LT v3.0:  Cell cycle analysis software and report generation.

Imaris 5.0: Advanced 3D and 4D rendering and measurments. Particle tracking.

FlowJo v10: Flow cytometry analysis

IDEAS: Amnis ImageStream data analysis.


To gain access to the software computers, you must contact Anna Webb or Richard Salinas.


The image processing computers are located in MBB 1.426U.


There are no feees for the use of these computers and software for facility users.